Basic Information
VIS ID
TVIS30012862
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
35623004/36994601 (Hg38)
End
35623004/36994601 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/1540504; hsa-mir-1-1/Downstream/1521962;
Nearest TSS
ENST00000382410/Upstream/42700; ENST00000598590/Downstream/73454;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/42553, chr20-CpG: 57/Downstream/100946
Nearby gene
RBL1(No orient, 1751)
Nearest cancer related gene
RBL1(TSG, No orient, 1751)
Upstream sequence
tcaatgtagagcttgggccatggcttcagagcatgtacgcctcaagccttggcagctttcacatggtgtgcacagaagtcaaaattgaggtttgggaacc
Downstream sequence
tctgcctagatttcagaggatgcatgaaaatgcctggatatccaggcagaagtttgttgcagggacagggctctcatggagaacctctgctagggcagtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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