Basic Information
VIS ID
TVIS30012876
Fusion event
HIV-LOC105372630 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
43885815/45257174 (Hg38)
End
43885815/45257174 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372630
Nearest miRNA
hsa-mir-103a-2/Upstream/848971; hsa-mir-1-1/Downstream/168336;
Nearest TSS
ENST00000382410/Upstream/2610; ENST00000372743/Downstream/48417;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/156024, chr20-CpG: 68/Downstream/36135
Nearby gene
SLPI(No orient, 2610)
Upstream sequence
ttggcacatagccacacatccattaatttatgtattgtctaaggctatctttccactacaatggcaacagggacctaaaatatttactgcacagcctaaa
Downstream sequence
atacttatcgtctggtcctttacagaaaatgctaacccctagaccaaacccacagcttgcataaaagagactgaatcccttagaagaagatccaggccca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate