VISDB Viral Integration Site DataBase

VIS ID

TVIS30012883

Fusion event

HIV-B4GALT5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.13

Reference genome

Start

End

48308288/49691751 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-503-5p ; hsa-mir-29b-3p ; hsa-mir-152-3p ; hsa-mir-34a-5p ; hsa-mir-502-3p ; hsa-mir-205-5p ; hsa-mir-6796-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-6881-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4764-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-1273f ; hsa-mir-299-3p ; hsa-mir-1265 ; hsa-mir-6888-5p ; hsa-mir-2278 ; hsa-mir-4524b-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-561-5p ; hsa-mir-6830-5p ; hsa-mir-4495 ; hsa-mir-551b-5p ; hsa-mir-7844-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3941 ; hsa-mir-5195-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-139-3p ; hsa-mir-873-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/2524693; hsa-mir-1-1/Downstream/172108;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/123455, chr20-CpG: 94/Downstream/21357

Upstream sequence

taaatctgtacatataatgtaagctcaattacgtttttgaaaaattacacatactcccctaaaaaaagatccagaagaaaaagcaccaaaatgttaacag

Downstream sequence

tgtgttatctttgggttatgaggttttagattgtctttattttccttatgcttcgctgtatttcccaaattttatacactgaatgtattatttttaaaat