Basic Information
VIS ID
TVIS30012887
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
49589887/50973350 (Hg38)
End
49589887/50973350 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/358565; hsa-mir-1-1/Downstream/479555;
Nearest TSS
ENST00000382410/Upstream/14524; ENST00000424566/Downstream/26020;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/13600, chr20-CpG: 17/Downstream/30559
Nearby gene
MOCS3(No orient, 11488)
Upstream sequence
TCTTCTGGCTCTTTATTTGGGCTCTCTCTCTCTGCAGCTTTTAGAGTTTTCCGTATCTTGCCTCCATCTTCAGAGGCTGCTCCAGTCTGCCAAGATCTGA
Downstream sequence
CCTTTTCTCCTCTGGAGGATTTGTTTGGGTCCTAGTAGCAGTCAGGTGTTCTCCCTTTTTCAGATAACCCTGTAGGGGCCAAGAAACCTGGGTGTAGTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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