Basic Information
VIS ID
TVIS30012894
Fusion event
HIV-ZNF831 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
57743058/59168003 (Hg38)
End
57743058/59168003 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF831
miRNAs that regulate target gene
hsa-mir-182-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4470 ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6865-3p ; hsa-mir-34b-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/349690; hsa-mir-1-1/Downstream/1140471;
Nearest TSS
ENST00000382410/Upstream/44599; ENST00000371030/Downstream/23017;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/124836, chr20-CpG: 114/Downstream/23338
Nearby gene
ZNF831(No orient, 23017)
Upstream sequence
gtgcagattgatttatgtttttttttttaattattttgttctactcatgtctgtgtctattctgacaatacagtcttgattactttggctatataataag
Downstream sequence
ttatcaagttaggtagactgattctttacactttattatctttcttcaaacttgtttgagttattccagttcttttgcctttctatataaattttagaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate