Basic Information
VIS ID
TVIS30012896
Fusion event
HIV-ZNF831 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
57820056/59245001 (Hg38)
End
57820056/59245001 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF831
miRNAs that regulate target gene
hsa-mir-182-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4470 ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6865-3p ; hsa-mir-34b-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/426688; hsa-mir-1-1/Downstream/1063473;
Nearest TSS
ENST00000382410/Upstream/53981; ENST00000371025/Downstream/55426;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/22563, chr20-CpG: 85/Downstream/55261
Upstream sequence
ttcctaccacaactattgctgcagtacacattcttgCCTGATTTCCCAAAGAGCAATTGCTGGATCAATGGTTTTATACTTACTTATTTCACCTTATAAG
Downstream sequence
ATACCACCAAATTACTTTTCAAAAACGGACTTACTCTCCCATCAATATTTTTAACAGTATTTTTAAAAAGAAACTTTGCTTCAGCAAGAGAGCAAACAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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