Basic Information
VIS ID
TVIS30012905
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62262765/63631412 (Hg38)
End
62262765/63631412 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-1/Upstream/344546; hsa-mir-1914/Downstream/288037;
Nearest TSS
ENST00000382410/Upstream/4162; ENST00000469728/Downstream/20982;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/3289, chr20-CpG: 136/Downstream/9526
Nearby gene
MHENCR(No orient, 2588)
Upstream sequence
ccaggcacagtggctcacacctgtaatctcagcactttgggaggccgaggcgggcagattcgttgaggtcaggagttcaaaacgagcctggctaaatggt
Downstream sequence
gaaaccccgtctctactaaaaatacaaaaaaattagccaggcatggtgacgggcgcctgtaatctcagctacttgggagactgaggcaggagaatcatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate