Basic Information
VIS ID
TVIS30012911
Fusion event
HIV-ZGPAT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62353974/63722622 (Hg38)
End
62353974/63722622 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/435756; hsa-mir-1914/Downstream/196827;
Nearest TSS
ENST00000382410/Upstream/13533; ENST00000484569/Downstream/7755;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/13700, chr20-CpG: 22/Downstream/12275
Upstream sequence
tttttagctatgctgttttaagttattttcttagtggttgctctagagatgacaatgtacatctttaacttaccacaatgtacttcagattattactaac
Downstream sequence
ttaacacttaaagtacaGCAtttttttttttatggagtttcactctgtcacccaggctggagtgcaatggtgtgatctcggctcactgcaacctccgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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