Basic Information
VIS ID
TVIS30012913
Fusion event
HIV-DNAJC5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62548332/63916979 (Hg38)
End
62548332/63916979 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNAJC5
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-93-3p ; hsa-mir-23b-3p ; hsa-mir-15b-5p ; hsa-mir-34a-5p ; hsa-mir-31-5p
Nearest miRNA
hsa-mir-1-1/Upstream/630113; hsa-mir-1914/Downstream/2470;
Nearest TSS
ENST00000382410/Upstream/21797; ENST00000623569/Downstream/24630;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/21293, chr20-CpG: 72/Downstream/2381
Upstream sequence
tatggctgtattttgcctgaccacacaggcagtcagaccttatggttgtcttcccttgttccctgaaaatcacgattattctgttctttttcaaggtgta
Downstream sequence
ctgatttcatattgttcaaacgcacgttttacagtttgtacagttaacacaattatagtggccctgaggtgatgtacatcctcagtttatgaagataaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate