Fusion event
HIV-PRPF6 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
62642141/64010788 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1-1/Upstream/68062; hsa-mir-6813/Downstream/66167;
Upstream sequence
ACTGCTCTTTGCCTCTAAGCTAAGTGGGATTTCTTTGGTTTTAAGCATTCCAGTTCACAGCATTCTGTGCAGTGATTTTTAGTCTTGGTTTTATGATACC
Downstream sequence
TAGTATGTCTTTAATTATCCTAAGGGGTATTGTGAAATTCTCCAAACAACATTAATCTTATTTTATTTACATAAAAATGAATAAAGCCCGTACACATCTT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.