Basic Information
VIS ID
TVIS30012921
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
18663918/17291599 (Hg38)
End
18663918/17291599 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/701274; hsa-mir-155/Downstream/1394491;
Nearest TSS
ENST00000624081/Upstream/417908; ENST00000613691/Downstream/147291;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1561115, chr21-CpG: 138/Downstream/220889
Nearby gene
LINC01549(No orient, 147290)
Upstream sequence
ttTTTTTttttttttttaatttatttttttattgataattcttgggtgtttctcacagagggggatttggcagggtcatgggacaatagtggagggaagg
Downstream sequence
tcagcagataaacaagtgaacaaaggtctctggttttcctaggcagaggaccctgcggccctccgcagtgtttgtgtccctgattacttgagattaggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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