VISDB Viral Integration Site DataBase

VIS ID

TVIS30012922

Fusion event

HIV-BTG3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q21.1

Reference genome

Start

End

18980715/17608397 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-340-5p ; hsa-mir-130b-3p ; hsa-mir-106b-5p ; hsa-mir-93-5p ; hsa-mir-615-3p ; hsa-mir-513a-5p ; hsa-mir-513b-5p ; hsa-mir-513c-5p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-219a-1-3p ; hsa-mir-888-5p ; hsa-mir-4797-5p ; hsa-mir-338-5p ; hsa-mir-410-3p ; hsa-mir-328-3p ; hsa-mir-5087 ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-3163 ; hsa-mir-8069 ; hsa-mir-548c-3p ; hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-448 ; hsa-mir-514b-5p ; hsa-mir-3119 ; hsa-mir-552-5p ; hsa-mir-511-3p ; hsa-mir-8066 ; hsa-mir-4511 ; hsa-mir-548b-3p

Nearest miRNA

hsa-let-7c/Upstream/1018072; hsa-mir-155/Downstream/1077693;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/94604, chr21-CpG: 22/Downstream/3290

Nearest cancer related gene

BTG3(TSG, No orient, 0)

Upstream sequence

aggagtttgaggctgcagtgagctatggttataccactgcactctagactgggtgacagagcaaaaacaataccacaaaaaaaaaaaaCTCCCAGAAAAG

Downstream sequence

CAAATCCCAGAGCCATTATTTACTAGTCGTGGATCACAGGTGAGTCACATTCATCTAGAAAATAGTTACACTGACTTCTACCACAAATATATAAATGAGA