Basic Information
VIS ID
TVIS30012923
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
20821500/19449183 (Hg38)
End
20821500/19449183 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/763019; hsa-mir-155/Downstream/3630101;
Nearest TSS
ENST00000624081/Upstream/147570; ENST00000486367/Downstream/450572;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1203626, chr21-CpG: 89/Downstream/1547922
Nearby gene
MIR548XHG(No orient, 689370)
Upstream sequence
gcctgaaagccaaatcaagaatgcaatccaatttacaataaccacaaagagaataaaatatctaggaatacagctaactagggaggagaaagatctctac
Downstream sequence
aataattacaaaacactgctaaaagaaattagtgataacaaacaagtggaaaaacattccatgtacattaataggaagtatctaaattgttaaaatggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate