VISDB Viral Integration Site DataBase

VIS ID

TVIS30012932

Fusion event

HIV-DYRK1A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.13

Reference genome

Start

End

38854914/37482612 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-148a-3p ; hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-99b-5p ; hsa-mir-92a-3p ; hsa-mir-1246 ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-620 ; hsa-mir-2113 ; hsa-mir-298 ; hsa-mir-1270 ; hsa-mir-5680 ; hsa-mir-6880-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-455-5p ; hsa-mir-2682-3p ; hsa-mir-6781-3p ; hsa-mir-6844 ; hsa-mir-3944-5p ; hsa-mir-143-5p ; hsa-mir-3165 ; hsa-mir-8071 ; hsa-mir-4683 ; hsa-mir-3152-5p ; hsa-mir-6836-3p ; hsa-mir-5692a ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-550b-2-5p ; hsa-mir-3157-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-3135a ; hsa-mir-4716-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-7151-5p

Nearest miRNA

hsa-let-7c/Upstream/1761804; hsa-mir-3197/Downstream/1964398;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/114687, chr21-CpG: 72/Downstream/80940

Upstream sequence

taatatcacaaggcaaatggaggcagggcgagatcgcaggaccacaggaccagggcgaaattaaaattgctaatgaagttttgggcaccactgtcattga

Downstream sequence

taacatcttatcaggagacagggtttgagagcagacaactggtctgaccaaaatttattaggcgggaatttccttgtcctaataagcctgggggtgctat