Basic Information
VIS ID
TVIS30012936
Fusion event
HIV-UBASH3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43844736/42424627 (Hg38)
End
43844736/42424627 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBASH3A
Nearest miRNA
hsa-let-7c/Upstream/677786; hsa-mir-5692b/Downstream/526301;
Nearest TSS
ENST00000624081/Upstream/20710; ENST00000454800/Downstream/71381;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/118421, chr21-CpG: 58/Downstream/71541
Upstream sequence
GAGCAGAGGGGAGCACCCCTGTGGGACAAACAACAGGGGGGCTTGAGTGTGAGGGCTCGGGAGAATAAGTGCCATCCCCCAGTCAAGATGAGGACTTTCC
Downstream sequence
CAACACTGAAGACAGACACAGCAGATTACTTCAAAAACCTCAGAGCAAGTTTACAGCAAATATCTCAGACATAAGAAAGGTACAAttaagggctaaattg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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