Basic Information
VIS ID
TVIS30012939
Fusion event
HIV-PCNT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
47749756/46329842 (Hg38)
End
47749756/46329842 (Hg38)
Orient
-
Location type
Intronic
Target gene
PCNT
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-30e-5p ; hsa-mir-30b-5p ; hsa-mir-222-3p ; hsa-mir-1238-3p ; hsa-mir-4668-5p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-627-3p ; hsa-mir-4762-5p ; hsa-mir-5584-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-670-3p
Nearest miRNA
hsa-let-7c/Upstream/851516;
Nearest TSS
ENST00000624081/Upstream/4954; ENST00000466474/Downstream/16296;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/4405, chr21-CpG: 149/Downstream/52708
Upstream sequence
AAGCATTCTGTTACTTATAACTGTTGCTGTGAGTAGTAACTTAACTGTTTAAAGCAGTATTTTAAAAACCAAAAGCTGGTAAAATGTAAGGATACTTTCT
Downstream sequence
CTAGGAAAAGTATGTGCTCCTGCAGCCAGGATTCTTCATGGAATGAAGGCATGGCAGGGCCTGACTGATTTTCATCTCACATCGTCATCCTGAACTCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate