Basic Information
VIS ID
TVIS30012945
Fusion event
HIV-CDC45 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19507256/19519733 (Hg38)
End
19507256/19519733 (Hg38)
Orient
+
Location type
Intronic
Target gene
CDC45
miRNAs that regulate target gene
hsa-mir-455-3p ; hsa-mir-575
Nearest miRNA
hsa-mir-3198-1/Upstream/1538772; hsa-let-7a-3/Downstream/444020;
Nearest TSS
ENST00000624155/Upstream/3299; ENST00000452326/Downstream/4667;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/39445, chr22-CpG: 144/Downstream/3707
Upstream sequence
CCAAGACTCTGTTGCAGGAGGTCCCTCAGGCCAGGCCTGGGGTCCTCCCCACTCTCccatccgtccgtccatccatccatctgtccatccctccaGGGGC
Downstream sequence
AAGCACCTGTTCTCCTGTTGGGGCTGGAGTGGGGGTTTCTGCTGACAACAGCATAGGGGGCCTCAGGGACCCCACAGTTCCTCTCAGGGTGGCCTGGGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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