Basic Information
VIS ID
TVIS30012946
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19577573/19590050 (Hg38)
End
19577573/19590050 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1609089; hsa-let-7a-3/Downstream/373703;
Nearest TSS
ENST00000624155/Upstream/23211; ENST00000452326/Downstream/76973;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/23160, chr22-CpG: 16/Downstream/66463
Nearby gene
LINC00895(No orient, 23211)
Upstream sequence
atgtcacttagcccaatatttttcaggtttatctatgttgtgtcatgtgtcagtatcaggatttcatctctttctgaggctgaatgatgccccactgtgt
Downstream sequence
ttatccattcatctgttggacacctgggctgcttctatctcttgctattgtgaagaatgctgctgtgaacatgggcgcacaagcttctgttccagttcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate