Basic Information
VIS ID
TVIS30012948
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19855612/19868089 (Hg38)
End
19855612/19868089 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1887128; hsa-let-7a-3/Downstream/95664;
Nearest TSS
ENST00000624155/Upstream/13150; ENST00000467943/Downstream/13065;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/12602, chr22-CpG: 68/Downstream/38771
Nearby gene
TXNRD2(No orient, 7429)
Upstream sequence
tatattgcttggagtttgctgtgattctttgatgtttgtcaacaaattcatgaaactttaggtcattgtttcttcagtttttttttcctgcctcattctc
Downstream sequence
tctcctctcctgagacatcaggatgtgagttgttttaatattgtcgctcaggtccctaaggctgttttttcattgttctttttaatcttgttactctcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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