Basic Information
VIS ID
TVIS30012950
Fusion event
HIV-PI4KA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
21129515/20775227 (Hg38)
End
21129515/20775227 (Hg38)
Orient
-
Location type
Intronic
Target gene
PI4KA
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-93-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1286/Upstream/526016; hsa-let-7a-3/Downstream/258949;
Nearest TSS
ENST00000624155/Upstream/1348; ENST00000406799/Downstream/3954;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/70722, chr22-CpG: 106/Downstream/83195
Upstream sequence
ATGCGTGACTGAAAAGGCCAACCCAGCTCTGGCAATTAGCAAGAAAGCACAATATGAAGTTCCCAGGAAAAAAAAAAAGCAAAACAAACTTTTGAATGAT
Downstream sequence
TTATCTTTAAAATATATTGTTTCTCTTCAAACAGTAATCTGGATTTAATCACAACCTAGTGATAGTTTTTAAACGTCTTCTACAATGTTTGTTATACTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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