Basic Information
VIS ID
TVIS30012953
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
21767813/21413524 (Hg38)
End
21767813/21413524 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/379252; hsa-let-7a-3/Downstream/239457;
Nearest TSS
ENST00000624155/Upstream/30150; ENST00000407598/Downstream/3880;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/27694, chr22-CpG: 173/Downstream/3083
Nearby gene
HIC2(No orient, 3880)
Upstream sequence
ctgcctcagcctcccaagtagctgggattacaggcatacgtcaccatgcctggctaatcttgtatttttagtagagacggggttttaccatgttggccag
Downstream sequence
gcaggtctcaaacttctgaccttgggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgagccaccgtgcccATCCTATTAATTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate