Basic Information
VIS ID
TVIS30012956
Fusion event
HIV-IGL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
23060253/22717768 (Hg38)
End
23060253/22717768 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGL
Nearest miRNA
hsa-mir-1286/Upstream/1064383; hsa-let-7a-3/Downstream/105008;
Nearest TSS
ENST00000624155/Upstream/2478; ENST00000390309/Downstream/2855;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/73025, chr22-CpG: 142/Downstream/352277
Nearby gene
GGTLC2(No orient, 69885)
Upstream sequence
GCCATGCACAAGACAACGTTGGGATAATATGTATGTTCTGATACACCATCTACAACGTaatcattaaaacatataaaaaccactatcagttctggggcca
Downstream sequence
ttaaaaaaattggtggcaggccagggatgtcccacaggatgtggtttaacggtctctgGTTTCTAGGGTTATTTGAAGTTTGAACATTGCACCCGCATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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