Basic Information
VIS ID
TVIS30012957
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
23188868/22846693 (Hg38)
End
23188868/22846693 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGL ; LOC105372948
Nearest miRNA
hsa-mir-1286/Upstream/23822; hsa-let-7a-3/Downstream/39574;
Nearest TSS
ENST00000624155/Upstream/8091; ENST00000523937/Downstream/3682;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/201950, chr22-CpG: 142/Downstream/223352
Nearby gene
MIR650(No orient, 23503)
Upstream sequence
catctaaaaccaccaggaaacgaagttTGGgtaggggaggaacaatatttccttctactcaacttagatttattggccagcagtccctatcacacaagac
Downstream sequence
agattaaaaaataaactcatgcacatttattaaatataatttttacttggcatgggagctttaataaggaaatgaaaactcagagaaatggctgaacctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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