Basic Information
VIS ID
TVIS30012960
Fusion event
HIV-CABIN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24420007/24023559 (Hg38)
End
24420007/24023559 (Hg38)
Orient
-
Location type
Intronic
Target gene
CABIN1
miRNAs that regulate target gene
hsa-mir-1226-3p ; hsa-mir-151a-3p ; hsa-mir-320a ; hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-1286/Upstream/1137180; hsa-let-7a-3/Downstream/1432087;
Nearest TSS
ENST00000624155/Upstream/12141; ENST00000474981/Downstream/31509;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11949, chr22-CpG: 70/Downstream/132455
Nearest cancer related gene
CABIN1(OG, No orient, 0)
Upstream sequence
ctgttttccacaggggctggaccattttacattcctaccagcagtacatgagtgtttgagtttttctacatccttgccaacacttgttattttccatttc
Downstream sequence
ctttctgttttatttttttgataatagccattctagtggatggaaatagtatctcactgtagttttgatttacatttcctggatgactaatttacaattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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