Basic Information
VIS ID
TVIS30012962
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
28140433/27744445 (Hg38)
End
28140433/27744445 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/1189122; hsa-let-7a-3/Downstream/176080;
Nearest TSS
ENST00000624155/Upstream/27965; ENST00000485599/Downstream/47438;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/66175, chr22-CpG: 503/Downstream/52360
Nearby gene
MN1(No orient, 3832)
Nearest cancer related gene
MN1(OG, No orient, 3832)
Upstream sequence
ctgaaaatcggactgtttaactcacctggcagccactcccagaggccctggaactctggcccaaggctctctgactgactccttcccagatcttctcggc
Downstream sequence
ttagcggctgaagactgacactgcccgatcgcctcggaagcccccagaccatcacggacgccgagcttcgggtaactctcacagtggaaggttcccacgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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