Basic Information
VIS ID
TVIS30012972
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
36564786/36168738 (Hg38)
End
36564786/36168738 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1286/Upstream/831939; hsa-let-7a-3/Downstream/118109;
Nearest TSS
ENST00000624155/Upstream/2561; ENST00000475519/Downstream/33139;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/102375, chr22-CpG: 24/Downstream/153667
Nearby gene
APOL3(No orient, 2561)
Upstream sequence
agaaagtattattttccttacttaccccacatcccacatcaggaaccctgcatagttaaagaatgaggccaattttttgatggggctttcattggctcta
Downstream sequence
taagtcaacctctattcctcaaagctgcctgctcatatgtgaaaatatgccatgccagtcaaagccttgataaaataactagtgtctccaatggtgtcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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