Basic Information
VIS ID
TVIS30012977
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
37368613/36972572 (Hg38)
End
37368613/36972572 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1286/Upstream/685665; hsa-let-7a-3/Downstream/871700;
Nearest TSS
ENST00000624155/Upstream/7324; ENST00000628507/Downstream/29684;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/115905, chr22-CpG: 154/Downstream/45706
Nearby gene
LL22NC01-81G9.3(No orient, 4400)
Upstream sequence
AATCCTGGCCCTgcctgtaatcccagcactttgggagatcacggtgagaggatcacttgagcctaggagctcaagaccagcctgggcaacacagggagac
Downstream sequence
cctcatctctacaaaaaatttttcagattagccaggtttggtggtgcgcacctggagatcccagccacttgggaagctgagatggaaggatcgtttgagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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