Basic Information
VIS ID
TVIS30012978
Fusion event
HIV-SSTR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
37612465/37216425 (Hg38)
End
37612465/37216425 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
SSTR3
miRNAs that regulate target gene
hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-6764-5p ; hsa-mir-3926 ; hsa-mir-1915-3p ; hsa-mir-6798-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-6854-5p ; hsa-mir-4535 ; hsa-mir-6749-3p ; hsa-mir-4776-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-623 ; hsa-mir-4493 ; hsa-mir-711 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-6756-3p ; hsa-mir-6837-5p ; hsa-mir-4761-3p ; hsa-mir-4685-5p ; hsa-mir-4753-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6781-5p ; hsa-mir-766-3p ; hsa-mir-6749-5p ; hsa-mir-4726-3p ; hsa-mir-6840-3p ; hsa-mir-6849-3p ; hsa-mir-3918
Nearest miRNA
hsa-mir-1286/Upstream/929518; hsa-let-7a-3/Downstream/627847;
Nearest TSS
ENST00000624155/Upstream/4103; ENST00000467664/Downstream/15078;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/8711, chr22-CpG: 19/Downstream/43140
Nearby gene
SSTR3(No orient, 4049)
Upstream sequence
cttacagtacaggagaagtttacatttcttacgcactctcaccccttctccccatcttctcaatatgagtttcggttaaatgcatatccagtgttcccat
Downstream sequence
gattaatgcaatgtaaatattatttcctgctcagccaggagttcataattgcttcgttttttggtttttaaaaatatcttcgatttcttggactaagcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate