VISDB Viral Integration Site DataBase

VIS ID

TVIS30012989

Fusion event

HIV-TAB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.1

Reference genome

Start

End

39803737/39407732 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30d-5p ; hsa-mir-26b-5p ; hsa-mir-6836-3p ; hsa-mir-4633-5p ; hsa-mir-4693-5p ; hsa-mir-4711-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-532-5p ; hsa-mir-6841-5p ; hsa-mir-892a ; hsa-mir-4318 ; hsa-mir-6818-3p ; hsa-mir-7150 ; hsa-mir-6873-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-8057 ; hsa-mir-4279 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-2276-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-935 ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-3692-3p ; hsa-mir-6881-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-1250-3p ; hsa-mir-483-3p ; hsa-mir-29a-5p

Nearest miRNA

hsa-mir-1286/Upstream/1418879; hsa-let-7a-3/Downstream/1406151;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/7566, chr22-CpG: 195/Downstream/48468

Upstream sequence

ctgccaccacgcccggctaattttttgtatttttagtagagacggggttttgctgtgttagccaggatggtctcgatctcctgacctcgtgattcgccgg

Downstream sequence

tctcggcctcctaaagtgctcagattgcaggtgtgagccaccgtgcccagcctaattttttgtatttttagtagagacgggttttcaccatgttagccag