VISDB Viral Integration Site DataBase

VIS ID

TVIS30013015

Fusion event

HIV-EP300 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.2

Reference genome

Start

End

41512691/41116687 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-182-5p ; hsa-mir-194-5p ; hsa-mir-26b-5p ; hsa-mir-374a-5p ; hsa-mir-150-5p ; hsa-mir-9-5p ; hsa-mir-130b-5p ; hsa-mir-615-3p ; hsa-mir-181d-5p ; hsa-mir-193b-3p ; hsa-mir-149-5p ; hsa-mir-140-5p ; hsa-mir-23b-3p ; hsa-mir-181b-5p ; hsa-mir-30c-5p ; hsa-mir-92a-3p ; hsa-mir-30a-3p ; hsa-mir-25-3p ; hsa-let-7b-5p ; hsa-mir-574-3p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-574-5p ; hsa-mir-4433b-3p ; hsa-mir-7109-5p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-4481 ; hsa-mir-4745-5p ; hsa-mir-1296-3p ; hsa-mir-129-5p ; hsa-mir-1297 ; hsa-mir-1305 ; hsa-mir-26a-5p ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-4465 ; hsa-mir-498 ; hsa-mir-555 ; hsa-mir-595 ; hsa-mir-6755-5p ; hsa-mir-6835-5p ; hsa-mir-6841-5p ; hsa-mir-6885-3p ; hsa-mir-6891-5p

Nearest miRNA

hsa-mir-1281/Upstream/24121; hsa-let-7a-3/Downstream/136305;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/23532, chr22-CpG: 95/Downstream/80332

Upstream sequence

ttttctttatccagtctgtcattgatgggGGGTGTTGTACTTTCAATCCCTTTTTTCCTTGGTCTTATTTTAGGTATAGTTCTTAAGTGTTTAAGTTTGT

Downstream sequence

TGATATAACCAAATATCCCCTCAATTTAAAAAATCTATAAAATGGTTTTAGTATGACCTAAAAAACTACCATACAAATAGTATATATATAGggctgtgtg