Basic Information
VIS ID
TVIS30013022
Fusion event
HIV-NDUFA6-DT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
42517826/42121822 (Hg38)
End
42517826/42121822 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA22A
Target gene
NDUFA6-DT
Nearest miRNA
hsa-mir-1281/Upstream/198525; hsa-let-7a-3/Downstream/3079132;
Nearest TSS
ENST00000624155/Upstream/30867; ENST00000626627/Downstream/8087;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/30580, chr22-CpG: 95/Downstream/6907
Upstream sequence
taaggaggctgaggtaagagagtcacttacttgagcacaggttgtggaggctgcaatgaaacgtgatcactgcactccagtctgggcaacagagcaagac
Downstream sequence
tctttctcaaaacaaaaaaTGTAGACAGTAGTCCCAGTTGAGTCATGATTTTAGTTTTTCTTcttctctttctttagttttttgtgcatctattatataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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