Basic Information
VIS ID
TVIS30013031
Fusion event
HIV-TUBGCP6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50670865/50232436 (Hg38)
End
50670865/50232436 (Hg38)
Orient
+
Location type
Intronic
Target gene
TUBGCP6
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-193b-3p ; hsa-mir-324-5p
Nearest miRNA
hsa-let-7a-3/Upstream/269497; hsa-mir-12114/Downstream/175006;
Nearest TSS
ENST00000624155/Upstream/6245; ENST00000453835/Downstream/7924;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11465, chr22-CpG: 82/Downstream/12322
Upstream sequence
gaatgggcaacagagcgagactctgtctcaaaaaaaaaaaagaaaaagaaaaagaaaaagaaaagaaaaaaatgagctgagtgtggtggcacgtgcctgt
Downstream sequence
agtcccagctacatggaggctaaggtgggaggattgagattcagcccaggaggtcgaggctactgtgagctgtgatggtgccactgcactccagcctggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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