Basic Information
VIS ID
TVIS30013040
Fusion event
HIV-NCAPH2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50951162/50512733 (Hg38)
End
50951162/50512733 (Hg38)
Orient
+
Location type
Intronic
Target gene
NCAPH2
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-124-3p
Nearest miRNA
hsa-let-7a-3/Upstream/105209;
Nearest TSS
ENST00000624155/Upstream/4473; ENST00000520297/Downstream/6814;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/4152, chr22-CpG: 180/Downstream/12446
Upstream sequence
tcgatctcccaggctcaagtgatcctcccatctcccaagtagctgggactgcaggcatgtgccaccgcacctggctaattttttgtatttttggtagaga
Downstream sequence
tggggtgtcactgtgttgcccaggctgttctcaaactcccaagctcaagtgatccacctgccttggcctcccagagtgctgggattataggtgtgagcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate