Basic Information
VIS ID
TVIS30013049
Fusion event
HIV-CHL1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
421240/379557 (Hg38)
End
421240/379557 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CHL1-AS1
Nearest miRNA
hsa-let-7g/Downstream/4870620;
Nearest TSS
ENST00000440867/Upstream/5505; ENST00000470005/Downstream/2629;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/70347, chr3-CpG: 182/Downstream/1718788
Upstream sequence
TCAGATAAAGTAGTCGAGCTTCAGATAAACTGGAATTCATCCCAGGCCTAGTGAGTAGAGGGGTAAGTGTCAGGCTCCGTGCGCTTTGTCCCTAAGTATT
Downstream sequence
TTGAGCAGTCTCAGCCACCAAAAGGACCGGGTCTCCTACTGCTTGGTGCTCCCCTTCTCAATTTCCTTACAAAATTTAAAAGTTCATTCTTGCGATTAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate