Basic Information
VIS ID
TVIS30013052
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
1909839/1868155 (Hg38)
End
1909839/1868155 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Downstream/3382022;
Nearest TSS
ENST00000440867/Upstream/466870; ENST00000490876/Downstream/119315;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1558945, chr3-CpG: 182/Downstream/230190
Nearby gene
CNTN4(No orient, 230711)
Upstream sequence
TTGCATGTCCactcattcattctacaaatatttattaaacagcacttcccatggcaagcactattgctaaatacaaatgacacttggacaaatcagatgg
Downstream sequence
gttacttatcctctaaaggttcacattatattggggTGCACATGTAAATGCATAGTGTTATGTGTGCTCTGATAAAATATGAATTGGTGGTAGTACAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate