Basic Information
VIS ID
TVIS30013054
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
7882491/7840804 (Hg38)
End
7882491/7840804 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4790/Upstream/2590549; hsa-let-7g/Downstream/2439547;
Nearest TSS
ENST00000440867/Upstream/147171; ENST00000428171/Downstream/175503;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/977850, chr3-CpG: 42/Downstream/660711
Nearby gene
GRM7(No orient, 99273)
Upstream sequence
aatcaattacaaactcattaaatttccacaaaaatattagtgtattttctaacaacttttataaatatagcatttgtaatagcaatgaaatcataagtga
Downstream sequence
tctaagaataaacaacatacatgcatgggcatgttaaaggagaaaaataaaactttatgaaagtttcactaactagaaaattaactatgtttatagataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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