Basic Information
VIS ID
TVIS30013055
Fusion event
HIV-LOC105376957 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
13941086/13899589 (Hg38)
End
13941086/13899589 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376957
Nearest miRNA
hsa-mir-12127/Upstream/3505027; hsa-let-7g/Downstream/1596650;
Nearest TSS
ENST00000440867/Upstream/19468; ENST00000432444/Downstream/225160;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3494, chr3-CpG: 50/Downstream/33404
Nearby gene
WNT7A(No orient, 19468)
Upstream sequence
gttttggtgggaggagttctatttttccattgttaagtttgaattgcctattagatattcatgtggagaggtctgcaagccacaggagaagacagggaag
Downstream sequence
tagatctacatttgggaggcataggcatgtggacaatattgaatgccaggaagagggtgcagatagagaagcatggagagcctttctgtgagtcctgggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate