Basic Information
VIS ID
TVIS30013060
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
18895391/18853899 (Hg38)
End
18895391/18853899 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/1920639; hsa-let-7g/Downstream/460949;
Nearest TSS
ENST00000440867/Upstream/408311; ENST00000475063/Downstream/294555;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/408358, chr3-CpG: 21/Downstream/293096
Nearby gene
KCNH8(No orient, 294626)
Upstream sequence
CAAATTTAATAATTAGTTTAAATTATGTACTCAATCTAACAACACAAATATAAAACATATATGTATAAAATGAACTTCGTAGGGTTTCTTCTTAGCTCAG
Downstream sequence
ATAGATTGTTACTTTTTATGAAGTATGATTTCTAGGATACTGAAGAAGTCTTCTTGCCCCTGCTTCTCAACTCTTACCCCTAGGAATTTCTTATCTACCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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