Basic Information
VIS ID
TVIS30013061
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
22453171/22411680 (Hg38)
End
22453171/22411680 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/2274039; hsa-let-7g/Downstream/3253193;
Nearest TSS
ENST00000440867/Upstream/38359; ENST00000628311/Downstream/790853;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/38806, chr3-CpG: 106/Downstream/790879
Nearby gene
ZNF385D-AS2(No orient, 431851)
Upstream sequence
tctgatcttagttatttcttgtcttctgctagcttctgaatttcctcttgcttctctagttctcttcattgtgatattagggtgttgattttagatcttt
Downstream sequence
cccactttctgatgtgggcatttagtgctataaatttccttctaaacactgcgtttacctgtgtcccagagactctggtacattgtgtctttcttctcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate