Basic Information
VIS ID
TVIS30013062
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23029321/22987830 (Hg38)
End
23029321/22987830 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/2850189; hsa-let-7g/Downstream/2677043;
Nearest TSS
ENST00000440867/Upstream/614509; ENST00000628311/Downstream/214703;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/614956, chr3-CpG: 106/Downstream/214729
Nearby gene
UBE2E2(No orient, 215463)
Upstream sequence
ttccaatattttctatttcatttttcaagctgccagtgagaacccactaatatgaatttatgacacacAATACATGGGACTAATGGTCTAAAAGGCACAG
Downstream sequence
CTTAAGGGACAATTATCAAGTAGTATTTACAGGGAGTGTAGCAGTGAACCAAGTGCCCCCAAACTATGCTAACATTAGAAAGTTCTGAGCCCTCAAAACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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