Basic Information
VIS ID
TVIS30013064
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
30305154/30263663 (Hg38)
End
30305154/30263663 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/4598724; hsa-let-7g/Downstream/898041;
Nearest TSS
ENST00000440867/Upstream/275590; ENST00000450746/Downstream/261082;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1687184, chr3-CpG: 88/Downstream/342832
Nearby gene
RBMS3(No orient, 253268)
Nearest cancer related gene
RBMS3(TSG, No orient, 253268)
Upstream sequence
aggaagtgcagatataagcatagaagctgcagcaagtagacaggggtgaagcctggaagccctgcttgttttctcagtagggaggcttgtagcctgggac
Downstream sequence
aagatctcagccttgtgcactagctgcctggatataaactcagtgctattggtgaggcatggtggaagtgagactgacctttctggctgtgtgggagctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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