Basic Information
VIS ID
TVIS30013067
Fusion event
HIV-CNOT10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
32747466/32705974 (Hg38)
End
32747466/32705974 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNOT10
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-12127/Upstream/199585; hsa-let-7g/Downstream/3038502;
Nearest TSS
ENST00000440867/Upstream/1156; ENST00000463697/Downstream/2723;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/20317, chr3-CpG: 92/Downstream/74807
Upstream sequence
tttaaaccccattaaaatTCAAAAATGAGaataatagctaccatttattgaatgcatactgggtgccaaattctgtattaagtgccttttatgccttatc
Downstream sequence
tcatataatcctcacattcaactcttgaggcagtaggtgcttattatctcagttttaaaaccagaatttaggaagtctaatttaaatttacacaactagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate