Basic Information
VIS ID
TVIS30013068
Fusion event
HIV-GLB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33038118/32996626 (Hg38)
End
33038118/32996626 (Hg38)
Orient
+
Location type
UTR3
Target gene
GLB1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-12127/Upstream/490237; hsa-let-7g/Downstream/2747850;
Nearest TSS
ENST00000440867/Upstream/45052; ENST00000485310/Downstream/27799;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/174703, chr3-CpG: 67/Downstream/99965
Upstream sequence
AGCTGTATTTATAGGTTATCTAGTCCAAAAGCAAGTCAAATAACGATCAGAAAAGCAGCAGTCCACAGATCAAACCAAGACTATTTTCCATCCTTTTGAA
Downstream sequence
CTTCAAGTTAGTGAAGTGGTTTATTCAGCCCACTCAAGTCTAGTTATGATTTAAGTCAGACCATATAATTCAATACCTGCACATTAAAAACAGTGACATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate