Fusion event
HIV-chr3 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
44141407/44099915 (Hg38)
Nearest miRNA
hsa-mir-12127/Upstream/4961649; hsa-let-7g/Downstream/14297;
Nearest cancer related gene
Upstream sequence
TGGGGTAATTTTGAAGAGTAGGATAAAAACTGAAGCGCCAGCAGAATTCTATCACCCAGGGATTTAAATCCTCACCTTCCTCACAACTGGCATGTGCAAT
Downstream sequence
GTACTTATTTCTCTTATCCTGTTCTTAAGCTTGATTGGGAGGATTTGGTTTTCGCTTATTCTCTTACTGCCTGGAATAGGAGCTTTAACTGGAAATTGCT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.