Basic Information
VIS ID
TVIS30013081
Fusion event
HIV-IP6K2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
48733676/48696243 (Hg38)
End
48733676/48696243 (Hg38)
Orient
+
Location type
Intronic
Target gene
IP6K2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-98-5p ; hsa-mir-125a-3p ; hsa-mir-18a-3p ; hsa-mir-6749-3p ; hsa-mir-3679-3p ; hsa-mir-150-5p ; hsa-mir-361-3p ; hsa-mir-186-3p ; hsa-mir-1264 ; hsa-mir-4668-3p
Nearest miRNA
hsa-mir-12127/Upstream/51963; hsa-let-7g/Downstream/323905;
Nearest TSS
ENST00000440867/Upstream/655; ENST00000435419/Downstream/19174;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/9919, chr3-CpG: 29/Downstream/20901
Upstream sequence
aagtgctgggattacaggtgtgagcgaccgcacccagccccattaattatatttttataaaatGCATTTAAATACAGGGAAAACCTGCTTACTCATTATC
Downstream sequence
TAGTAAGACTCATTATTTACTTGTCCAGGTTGTCTACCCACACTGCTCCTGCCCAAGGCCAAAGACGAGCCCCATTAACCTTGTTAGCAATGGAGCTTGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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