Basic Information
VIS ID
TVIS30013082
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
48891148/48853715 (Hg38)
End
48891148/48853715 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/209435; hsa-let-7g/Downstream/166433;
Nearest TSS
ENST00000440867/Upstream/5758; ENST00000463738/Downstream/4953;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/5742, chr3-CpG: 41/Downstream/44893
Nearby gene
PRKAR2A-AS1(No orient, 1733)
Upstream sequence
ggccccgtctgtactgaaaatacaaaaattagccacgcgtggtggtgtgcacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaac
Downstream sequence
ccaagaggcggaggttgcagtgagctgagatcgctccactgcctccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaaGGCTGTAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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