Basic Information
VIS ID
TVIS30013088
Fusion event
HIV-DAG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49512533/49475100 (Hg38)
End
49512533/49475100 (Hg38)
Orient
-
Location type
Intronic
Target gene
DAG1
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-1229-3p ; hsa-mir-423-5p ; hsa-mir-18a-3p ; hsa-mir-222-3p ; hsa-mir-3676-3p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-12127/Upstream/200914; hsa-let-7g/Downstream/331037;
Nearest TSS
ENST00000440867/Upstream/4746; ENST00000475424/Downstream/17616;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/4243, chr3-CpG: 39/Downstream/64714
Upstream sequence
acggggtttcactgtgttaaccaggatggtctcgatctactgacctcttgatctgcctgcctcggcctcccgaagtgctgggattacagacgtgagccac
Downstream sequence
cgtgcccggttttttttttttaagatggagtttcgcttttgttacccagattcgagtgcaatggtgcgatattggttcactgcaacctccacctcctggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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