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TVIS30013090
Basic Information
VIS ID
TVIS30013090
Fusion event
HIV-IP6K1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49812552/49775119 (Hg38)
End
49812552/49775119 (Hg38)
Orient
-
Location type
Intronic
Target gene
IP6K1
miRNAs that regulate target gene
hsa-mir-877-3p
;
hsa-mir-744-5p
;
hsa-mir-125a-5p
;
hsa-mir-125b-5p
;
hsa-mir-93-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-mir-6742-5p
;
hsa-mir-92a-2-5p
;
hsa-mir-6766-5p
;
hsa-mir-6756-5p
;
hsa-mir-608
;
hsa-mir-4651
;
hsa-mir-7704
;
hsa-mir-615-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-5194
;
hsa-mir-6738-5p
;
hsa-mir-1914-3p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-6791-5p
;
hsa-mir-4292
;
hsa-mir-4308
;
hsa-mir-6782-5p
;
hsa-mir-4756-5p
;
hsa-mir-1321
;
hsa-mir-4739
;
hsa-mir-6873-5p
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-6894-3p
;
hsa-mir-4314
;
hsa-mir-5192
;
hsa-mir-152-5p
;
hsa-mir-4644
;
hsa-mir-4306
;
hsa-mir-185-5p
;
hsa-mir-3202
;
hsa-mir-4763-5p
;
hsa-mir-3179
;
hsa-mir-6499-3p
;
hsa-mir-7155-5p
;
hsa-mir-637
;
hsa-mir-8089
;
hsa-mir-4700-5p
;
hsa-mir-4667-5p
;
hsa-mir-17-3p
;
hsa-mir-6876-5p
;
hsa-mir-4476
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3936
;
hsa-mir-3125
;
hsa-mir-4276
;
hsa-mir-361-3p
;
hsa-mir-4286
;
hsa-mir-194-3p
;
hsa-mir-5693
;
hsa-mir-1296-3p
;
hsa-mir-6510-3p
;
hsa-mir-7856-5p
;
hsa-mir-4503
;
hsa-mir-6881-3p
;
hsa-mir-7111-3p
;
hsa-mir-6780a-3p
;
hsa-mir-6792-5p
;
hsa-mir-4281
;
hsa-mir-7152-3p
;
hsa-mir-3667-3p
;
hsa-mir-6756-3p
;
hsa-mir-3127-3p
;
hsa-mir-6757-3p
;
hsa-mir-133a-3p
;
hsa-mir-3674
;
hsa-mir-6844
;
hsa-mir-3156-3p
;
hsa-mir-1260b
;
hsa-mir-1260a
;
hsa-mir-188-3p
;
hsa-mir-142-3p
;
hsa-mir-6073
;
hsa-mir-5581-5p
;
hsa-mir-4297
;
hsa-mir-4726-3p
;
hsa-mir-6764-5p
;
hsa-mir-1915-3p
;
hsa-mir-6777-3p
;
hsa-mir-6840-3p
;
hsa-mir-3142
;
hsa-mir-4650-5p
;
hsa-mir-1245b-5p
;
hsa-mir-605-5p
;
hsa-mir-1207-5p
;
hsa-mir-1233-5p
;
hsa-mir-1248
;
hsa-mir-1249-5p
;
hsa-mir-1273h-5p
;
hsa-mir-1324
;
hsa-mir-30b-3p
;
hsa-mir-3166
;
hsa-mir-342-5p
;
hsa-mir-3675-5p
;
hsa-mir-3677-5p
;
hsa-mir-3689a-3p
;
hsa-mir-3689b-3p
;
hsa-mir-3689c
;
hsa-mir-4270
;
hsa-mir-4423-3p
;
hsa-mir-4441
;
hsa-mir-4519
;
hsa-mir-4664-5p
;
hsa-mir-4763-3p
;
hsa-mir-486-3p
;
hsa-mir-6721-5p
;
hsa-mir-6737-5p
;
hsa-mir-6747-5p
;
hsa-mir-6754-5p
;
hsa-mir-6760-5p
;
hsa-mir-6778-5p
;
hsa-mir-6779-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6797-5p
;
hsa-mir-6799-5p
;
hsa-mir-6812-5p
;
hsa-mir-6819-5p
;
hsa-mir-6878-5p
;
hsa-mir-7106-5p
Nearest miRNA
hsa-mir-12127/Upstream/500933; hsa-let-7g/Downstream/31018;
Nearest TSS
ENST00000440867/Upstream/26191;
ENST00000333323/Downstream/11075;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/50657
,
chr3-CpG: 82/Downstream/10930
Upstream sequence
atttaatataaataactgattcattaacactgaactatagttaacagcattataactcatgcctgaacaaaacttccctacacattccttgtaaggtaat
Downstream sequence
caaagccttcttgtgtttaaaaacaccaggcagcacttcaatacgtttgggggccattttaagcatcaaaatcaccaacaaGGCCAGGCGCAGTGGCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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