VISDB Viral Integration Site DataBase

VIS ID

TVIS30013091

Fusion event

HIV-IP6K1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

49818142/49780709 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-93-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-5194 ; hsa-mir-6738-5p ; hsa-mir-1914-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6782-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6894-3p ; hsa-mir-4314 ; hsa-mir-5192 ; hsa-mir-152-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-3202 ; hsa-mir-4763-5p ; hsa-mir-3179 ; hsa-mir-6499-3p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-17-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3936 ; hsa-mir-3125 ; hsa-mir-4276 ; hsa-mir-361-3p ; hsa-mir-4286 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-1296-3p ; hsa-mir-6510-3p ; hsa-mir-7856-5p ; hsa-mir-4503 ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-6780a-3p ; hsa-mir-6792-5p ; hsa-mir-4281 ; hsa-mir-7152-3p ; hsa-mir-3667-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6757-3p ; hsa-mir-133a-3p ; hsa-mir-3674 ; hsa-mir-6844 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6777-3p ; hsa-mir-6840-3p ; hsa-mir-3142 ; hsa-mir-4650-5p ; hsa-mir-1245b-5p ; hsa-mir-605-5p ; hsa-mir-1207-5p ; hsa-mir-1233-5p ; hsa-mir-1248 ; hsa-mir-1249-5p ; hsa-mir-1273h-5p ; hsa-mir-1324 ; hsa-mir-30b-3p ; hsa-mir-3166 ; hsa-mir-342-5p ; hsa-mir-3675-5p ; hsa-mir-3677-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4270 ; hsa-mir-4423-3p ; hsa-mir-4441 ; hsa-mir-4519 ; hsa-mir-4664-5p ; hsa-mir-4763-3p ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-6737-5p ; hsa-mir-6747-5p ; hsa-mir-6754-5p ; hsa-mir-6760-5p ; hsa-mir-6778-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6797-5p ; hsa-mir-6799-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6878-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-mir-12127/Upstream/506523; hsa-let-7g/Downstream/25428;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/56247, chr3-CpG: 82/Downstream/5340

Upstream sequence

AGTGAGATCAAGCCACAACAAAGAAAAGGGCCTAAAAATGTTTGCATCCAGTGCCATGCTCACAGAAATGTTTTCCTAGAAAAGTGGCACTTTAACCAGG

Downstream sequence

AAGGGCTCTTTCCAGGCCTTAGTTCTGCCCTTTGAGCAAGTTCTGTCTCTGTTCTGCAGCACTAAGGGATGGGCCTGCCTCTATAAAGCACTAGAGTTAA