Basic Information
VIS ID
TVIS30013092
Fusion event
HIV-HYAL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
50347095/50309664 (Hg38)
End
50347095/50309664 (Hg38)
Orient
+
Location type
UTR5
Target gene
HYAL1
miRNAs that regulate target gene
hsa-mir-25-3p
Nearest miRNA
hsa-mir-12127/Upstream/36367; hsa-let-7g/Downstream/365416;
Nearest TSS
ENST00000440867/Upstream/5548; ENST00000629828/Downstream/2717;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/10216, chr3-CpG: 17/Downstream/10358
Upstream sequence
ttaaggaatcaaacttaacttatggagccaataaagcccttgggaaaactggcctcacattttgtgtacacagtccctgtacaggatttcttacctgtgg
Downstream sequence
taagtaaagaatgtcactttctggggccaggagtggtggctcatgcctgtaatcccagcactttgggaggccaacgcgggaggatcacctgaggtcagga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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